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Data

This page lists all the data sources currently loaded along with the date the data was downloaded and links to the relevant resource.

Data Category Organism Data Source PubMed

Genes & Proteins

H. sapiens

M. musculus

R. norvegicus

D. melanogaster

D. rerio

C. elegans

M. mulatta

Gene annotation Gene Ontology - Version 27-08-2014 Gene Ontology Consortium - PubMed: 10802651

H. sapiens

M. musculus

R. norvegicus

D. melanogaster

D. rerio

C. elegans

M. mulatta

Protein annotation, gene identifiers and mappings UniProt - Release 2014_07 UniProt Consortium - PubMed: 17142230

Homology

H. sapiens

M. musculus

R. norvegicus

D. melanogaster

D. rerio

C. elegans

M. mulatta

Orthologues and paralogue relationships between these 8 organisms Ensembl Compara - Version 76 Vilella et al - PubMed: 19029536

Interactions

H. sapiens

M. musculus

R. norvegicus

D. melanogaster

D. rerio

C. elegans

Interactions from the BioGRID BioGRID - Version 3.2.118 Stark et al - PubMed:16381927

Expression

D. rerio Gene expression by stage and tissue ZFIN - 23 September 2014 Bradford et al - PubMed: 21036866
D. melanogaster Genome-wide RNA_seq Expression Data: raw data produced by modENCODE analysed by FlyBase Flybase - Version 2014_01 St Pierre et al - PubMed: 24234449
H. sapiens Human gene expression atlas of 5372 samples representing 369 different cell and tissue types, disease states and cell lines (experiment E-MTAB-62) ArrayExpress Atlas - June 2011 Petryszak et al - PubMed: 24304889
M. musculus Gene expression by stage and tissue GXD - 23 October 2014 Smith et al - PubMed:24163257

Phenotypes

M. musculus Mammalian phenotypes of spontaneous, induced and engineered mutations MGI - 25 September 2014 Blake et al - PubMed: 24285300

D. melanogaster

H. sapiens

High-throughput cell-based RNAi screens GenomeRNAi - Version 11.0 Schmidt et al - PubMed: 23193271

Tissue expression

H. sapiens

Antibody tissue staining from the Human Protein Atlas HPA - Version 13 Uhlen et al - PubMed: 21139605

Pathways

H. sapiens

M. musculus

R. norvegicus

D. melanogaster

D. rerio

C. elegans

M. mulatta

Pathway information and the genes involved in them KEGG - October 2014 Kanehisa et al - PubMed: 16381885

Diseases

H. sapien Human disease data set OMIM - Version September 2014 Amberger et al - PubMed: 18842627